Source
: Flavobacterium okeanokoites IFO 12536
Compatible ends
(5'¡¦NNNN)
Aar I, Acc36 I, Alw26 I, Bbs I, Bbv I, BfuA I, Bpi I, BpuA I, Bsa I, BseX I, BslF I, BsmA I, BsmB I, BsmF I, Bso31 I, BspM I, BspTN I, BstMA I, BstV1 I, BstV2 I, BtgZ I, Bve I, Eco31 I, Esp3 I, Faq I, Lwe I, SfaN I
Isoschizomers
: Not known.
Methylation Sensitivity
: Not sensitive to dam, dcm and CpG methylation
Unit definition :
One Unit is defined as the amount of Fok I required to completely digest 1 §¶ of ¥ë DNA in one hour at 37¡É in 50 §¡ assay mixture.
Typical Reaction Conditions
: Add 5 §¡ of 10X Reaction Buffer 'B'[final conc.: 6 mM Tris-HCl(pH 7.5 @ 37¡É), 6 mM MgCl2, 50 mM NaCl, 1 mM DTT], 1~2 §¡ of DNA(0.5~1.0 §¶/§¡), 1 §¡ of Fok I and 42~43 §¡ of sterile water in 50 §¡ reaction mixture. Incubate at 37¡É.
Heat Inactivation
: 65¡É for 20 min.
Activity in BeamsBio¢â Buffer System
Rxn Buffer |
A |
B |
C |
D |
Activity(%) |
75~100 |
75~100 |
75~100 |
10~50 |
|
Activity in a complete PCR Mix : 75~100% Conditions: [10 mM Tris-HCl(pH 8.3 @ 25¡É), 50 mM KCl, 1.5 mM MgCl2, 2 pmol of primers, 200 ¥ìM dNTP Mix, 2.5 U Taq DNA polymerase and 1 §¶ of DNA(template or substrate) in 50 §¡ of reaction volume] After 30 amplication cycles, add 5 units of Fok I. And then incubate at 37¡É for one hour. Relative activity is determined by gel electrophoresis.
Storage Conditions
: 10 mM Tris-HCl(pH 7.4 @ 25¡É), 50 mM NaCl, 0.1 mM EDTA, 1 mM DTT, 200 §¶/§¢ BSA, and 50% glycerol. Store at -20¡É.
No. of Cleavage Sites
¥ë
|
Ad2
|
pUC18
|
¥õX174
|
pBR322
|
M13mp18
|
SV40
|
150
|
78
|
5
|
8
|
12
|
4
|
11
|
Quality control
Overdigestion: The same band pattern as a digestion in one unit of Fok I for one hour was showing after incubation of 1 §¶ of ¥ë DNA with units of Fok I for 16 hr in 50 §¡ of reaction mixture at 37¡É as determined by agarose gel electrophoresis.
Ligation-Recut: After a 10-fold digestion for one hour, % of ¥ë DNA fragments were ligated with T4 DNA ligase at 16¡É and % of the ligated fragments could be recut with Fok I.
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References
Sugisaki, H., Kanazawa, S. Gene 16: 73-78 (1981)/ Kita, K., Kotani, H., Hiraoka, N., Nakamura, T., Yonaha, K. Nucleic Acids Res. 17: 8741-8753 (1989)
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