Source
: Anabaena flos-aquae CCAP 1403/13f
Compatible ends
(5'¡¦TTAA) & Isoschizomers
: Bfr I, BspT I, Bst98 I, BstAF I, MspC I, Vha464 I
Methylation Sensitivity
: Not sensitive to dcm, dam and CpG methylation
Unit definition :
One Unit is defined as the amount of Afl II required to completely digest 1 §¶ of ¥õX174 RF I DNA in one hour at 37¡É in 50 §¡ assay mixture.
Typical Reaction Conditions
: Add 5 §¡ of 10X Reaction Buffer 'C'[final conc.: 10 mM Tris-HCl (pH 7.9 @ 37¡É), 10 mM MgCl2, 50 mM NaCl, 1 mM DTT], 1~2 §¡ of DNA(0.5~1.0 §¶/§¡), 5 §¡ of 10X BSA(final conc.: 100 §¶/§¢), 1 §¡ of Afl II and 37~38 §¡ of sterile water in 50 §¡ reaction mixture. Incubate at 37¡É.
Heat Inactivation
: 65¡É for 20 min.
Activity in BeamsBio¢â Buffer System
Rxn Buffer |
A |
B |
C |
D |
Activity(%) |
50~75 |
75~100 |
75~100 |
10~50 |
|
Activity in a complete PCR Mix : less than 10% Conditions: [10 mM Tris-HCl(pH 8.3 @ 25¡É), 50 mM KCl, 1.5 mM MgCl2, 2 pmol of primers, 200 ¥ìM dNTP Mix, 2.5 U Taq DNA polymerase and 1 §¶ of DNA(template or substrate) in 50 §¡ of reaction volume] After 30 amplication cycles, add 5 units of Afl II. And then incubate at 37¡É for one hour. Relative activity is determined by gel electrophoresis.
Storage Conditions
: 10 mM Tris-HCl(pH 7.4), 50 mM KCl, 0.5 mM EDTA, 1 mM DTT, 200 §¶/§¢ BSA, and 50% glycerol. Store at -20¡É.
No. of Cleavage Sites
¥ë
|
Ad2
|
pUC18
|
¥õX174
|
pBR322
|
M13mp18
|
SV40
|
3
|
4
|
0
|
2
|
0
|
0
|
1
|
Quality control
Overdigestion: The same band pattern as a digestion in one unit of Afl II for one hour was showing after incubation of 1 §¶ of ¥õX174 RF I DNA with Units of Afl II for 16 hr in 50 §¡ of reaction mixture at 37¡É as determined by agarose gel electrophoresis.
Ligation-Recut: After a 10-fold digestion for one hour, % of ¥õX174 RF I DNA fragments were ligated with T4 DNA ligase at 16¡É and % of the ligated fragments could be recut with Afl II.
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References
Roberts, R.J., Nucleic Acid Res., 10: r117-r144 (1982)/ Whitehead, P. R., Brown, N. L., J. Gen. Micorbiol.. 131:951-958 (1985)
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